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Drug-INSTAR
DrugINSTAR is a comprehensive online searchable Tool for natural products contain compounds isolated from Plants, Microorganisms, Marine species, Animals and the rest from other natural sources includes various types of Alkaloids, Terpenoids, Flavonoids, Coumarins, Steroids, Peptides, Glycosides, Phenolics, Sesquiterpenoids, Lipids, Carotenoids and other and their corresponding detail information like Source, Biosynthesis, Physical, Molecular and Biological properties,Uses, Bioassay and Suppiler as well as 3D visualization of molecular structure.

Natural products
A natural product is a chemical compound or substance produced by a living organism - found in nature that usually has a pharmacological or biological activity for use in pharmaceutical drug discovery and drug design.
Natural products have played an important role throughout the world in treating and preventing human diseases. Natural product medicines have come from various source materials including terrestrial plants, terrestrial microorganisms, marine organisms, and terrestrial vertebrates and invertebrates.
The value of natural products in this regard can be assessed using 3 criteria:
(1) The rate of introduction of new chemical entities of wide structural diversity, including serving as templates for semi-syntheticand total synthetic modification,
(2) The number of diseases treated or prevented by these substances,
(3) Their frequency of use in the treatment of disease.
A natural product can be considered as such even if it can be prepared by total synthesis. Not all natural products can be fully synthesized and many natural products have very complex structures that are too difficult and expensive to synthesize on an industrial scale. These include drugs such as penicillin,morphine,and paclitaxel(Taxol). Such compounds can only be harvested from their natural source - a process which can be tedious, time consuming, and expensive, as well as being wasteful on the natural resource.
Semisynthetic procedures can sometimes get around these problems. This often involves harvesting a biosynthetic intermediate from the natural source, rather than the final (lead) compound itself. The intermediate could then be converted to the final product by conventional synthesis. This approach can have two advantages.
(1)The intermediate may be more easily extracted in higher yield than the final product itself.
(2) It may allow the possibility of synthesizing analogues of the final product.
Natural Resources
Natural products may be extracted from tissues of terrestrial plants,marine organisms,microorganism fermentation broths and terrestrial vertebrates and invertebrates.
A crude (untreated) extract from any one of these sources typically contains novel, structurally diverse chemical compounds,Chemical diversity in nature is based on biological and geographical diversity.
Lead compounds have been found in almost every category life form, for example-
| Life form |
Species |
Lead Compound/Drug |
| Moulds |
Cephalosporin acremonium |
cephalosporins (β-lactam antibiotic) |
| Plants |
yew tree |
taxol (antitumour agent) |
| Marine Organism |
deep water sponge |
discodermolide (antitumour agent) |
| Reptile |
snake venoms |
teproptide (ACE inhibitor) |
- PLANT SOURCES
- ANIMAL SOURCES:
- MARINE SOURCES
- MICROBIAL SOURCES
1. PLANT SOURCES:
Plants have always been a rich source of lead compounds (e.g. morphine, cocaine, digitalis, quinine, tubocurarine, nicotine, and muscarine). Many of these lead compounds are useful drugs in themselves (e.g. morphine and quinine), and others have been the basis for synthetic drugs (e.g. local anaesthetics developed from cocaine). Clinically useful drugs which have been recently isolated from plants include the anticancer agent paclitaxel (Taxol) from the yew tree, and the antimalarial agent artemisinin from Artemisia annua.
Plants provide a large bank of rich, complex and highly varied structures which are unlikely to be synthesized in laboratories. Furthermore, evolution has already carried out a screening process itself whereby plants are more likely to survive if they contain potent compounds which deter animals or insects from eating them. Even today, the number of plants that have been extensively studied is relatively very few and the vast majority has not been studied at all.
2. ANIMAL SOURCES:
Animals can sometimes be a source of new lead compounds. For example, a series of antibiotic peptides were extracted from the skin of the African clawed frog and a potent analgesic compound called epibatidine was obtained from the skin extracts of the Ecuadorian poison frog.
3. MARINE SOURCES:
In recent years, there has been a great interest in finding lead compounds from marine sources. Coral, sponges, fish, and marine microorganisms have a wealth of biologically potent chemicals with interesting inflammatory, antiviral, and anticancer activity. For example, curacin A is obtained from a marine cyanobacterium and shows potent antitumor activity. Other antitumor agents derived from marine sources include eleutherobin, discodermolide, bryostatins, dolostatins, and cephalostatins.
Natural products from marine organisms are released into the water and therefore are rapidly diluted; accordingly they must be very potent materials to have the desired end effect. The richly available marine biodiversity that is available to us has to this point only been explored to an extremely limited extent. Furthermore, the primary chemical diversity available from marine organisms is most likely capable of delivering an even greater abundance of secondary metabolites for research use. For all of these reasons it is believed that the natural products that are available from the seas and oceans provide a tremendous opportunity for the discovery of novel therapeutic agents. The first discovery of a marine-based biologically active compound of therapeutic interest was really quite by accident approximately 10 years after the end of the World War II [29, 30]. The C-nucleosides isolated from the Caribbean sponge Cryptotheca crypta were found to possess antiviral activity.
This discovery eventually led to the development of cytosine arabinoside, a useful antineoplastic agent. Biologically active marine proteins derived from the venom of marine snails of the Conus genus have attracted a significant level of research over the years. These conotoxin peptides interact in a unique fashion with voltage-gated ion channels to induce a wide spectrum of Pharmacological effects. Such effects include anesthesia, analgesia, and anticonvulsant activity. The conotoxin ziconotide is currently under review in the United States for use in the treatment of chronic, opiate-resistant pain.
According to some estimates, there are most likely approximately 1000 different Conus snails. Each snail produces up to approximately 200 different venoms. The broad spectrum of biological activities manifested by each of these venom components multiplied by the number of snails and venom components available suggests significant opportunity for new drugs from the snail alone. The mussel Mytilis edulis has been reported to produce antibacterial peptides and cytotoxic lectins. Horseshoe crabs produce a variety of different antibacterial peptides and proteins. Indeed, Limulus polyphemus produces an interesting group of antimicrobial peptides referred to as polyphemusins, and a synthetic peptide based on the sequence of polyphemusin II has been reported to strongly inhibit the cytopathic effect of infection with HIV.
4. MICROBIAL SOURCES:
Microorganisms such as bacteria and fungi have been invaluable for discovering drugs and lead compounds. These microorganisms produce a large variety of antimicrobial agents which have evolved to give their hosts an advantage over their competitors in the microbiological world.
The screening of microorganisms became highly popular after the discovery of penicillin. Soil and water samples were collected from all over the world in order to study new bacterial or fungal strains, leading to an impressive arsenal of antibacterial agents such as the cephalosporins, tetracyclines, aminoglycosides, rifamycins, and chloramphenicol.
Although most of the drugs derived from microorganisms are used in antibacterial therapy, some microbial metabolites have provided lead compounds in other fields of medicine. For example, asperlicin - isolated from Aspergillus alliaceus - is a novel antagonist of a peptide hormone called cholecystokinin (CCK) which is involved in the control of appetite. CCK also acts as a neurotransmitter in the brain and is thought to be involved in panic attacks. Analogues of asperlicin may therefore have potential in treating anxiety. Other examples include the fungal metabolite lovastatin, which was the lead compound for a series of drugs that lower cholesterol levels, and another fungal metabolite called ciclosporin which is used to suppress the immune response after transplantation operations.
Microorganisms have proven to be an excellent source of novel natural products including polyketide and peptide antibiotics as well as classes of other biologically active compounds. Today, microbial metabolites are used as antineoplastic agents (e.g., mitomycin), immunosuppressive agents (e.g., rapamycin), hypocholesterolemic agents (e.g., pravastatin), enzyme inhibitors (e.g., desferal), antimigraine agents (e.g., ergot alkaloids), herbicides (e.g., bialaphos), antiparasitic agents (e.g., salinomycin), bioinsecticides (e.g., tetranactin), and ruminant growth promoters (e.g., monensin). It is noteworthy that some of these compounds when originally discovered failed in their development for their original uses as either antibiotics or as agricultural fungicides. Bacteriocins are ribosomally produced antibiotic peptides and proteins that can be subdivided into different categories, antibiotics, and microcins. Lantibiotics are produced by Gram-positive bacteria and microcins are produced by Gram-negative bacteria. Both antibiotics and microcins possess an ability to form pores or punch holes in membranes of susceptible microorganisms. This property is of interest to the food industry, as bacteriocins are produced by Lactococcus spp., which are used in the preservation of various foodstuffs.
Natural product and Drug Discovery
Natural products are an important source of new structures leading to drugs in all major disease areas. Because-
• Each plant has potentially 10,000 different constituents.
• 35% of drugs contain ‘principles’ (key structure elements) of natural origin.
• Less than 5% of the 500,000 higher plant species have undergone biological pharmacological screening.
• 80% of the world’s population uses drugs exclusively from natural sources.
Based on the fact that many existing drugs are based upon natural products and that natural products have served as excellent lead compounds, general natural product screening is widely used as a method of finding lead compounds.
Thus extracts from plants, marine organisms, animal toxins, microbial broths are all used in biological activity screening tests (assays) in the search for biological activity. For this a relevant target needs to have been identified and a screen developed. If an extract gives a positive ‘hit’ then the active constituent is isolated to hopefully serve as a lead compound.
The development of a novel drug from natural sources might follow the following pattern.
1) Screening of natural compounds for biological activity.
2) Isolation and purification of the active principle.
3) Determination of structure.
4) Structure-activity relationships (SARs).
5) Synthesis of analogues.
6) Receptor theories.
7) Design and synthesis of novel drug structures.
Advantages of natural product screening :
• Molecules are structurally diverse
• Much precedence as a source of lead compounds.
Problems with natural product screening :
.• The mixtures are often very complex and contain many large macromolecules (e.g. carbohydrates, lipids, proteins etc). This range of products can often hide biological activity.
• Isolation of an active component present in a very small amount can be problematic given a large amount of background rubbish.
• Compound isolation and structure determination difficult
• Structures often complex, therefore difficult to synthesise and identify pharmacophore
(the key structural element needed for a product to have activity).
Natural Drugs
Some drugs which have been developed from natural compounds
| Compound |
Origin |
Uses |
| Artemisinin |
Sweet wormwood |
Antimalarial derived from a traditional chinese medicine. |
| Acyclovir |
Synthetic analogue of cytarabine from a marine source |
Used to treat herpes infections |
| Cyclosporin |
Fungus |
Used to prevent tissue graft rejection. |
| Digoxin |
Foxglove |
Digitalis has been used since 1775: digoxin remains an effective drug for heart failure. |
| Diosgenin |
Mexican wild yam |
Used in manufacture of steroidal contraceptives and In hormone replacement. |
| Etoposide |
May apple |
Synthetic analogue of podophyllotoxin. Used in chemotherapy to treat testicular and some lung cancers. |
| Galanthamine |
Snowdrop |
In trials for Alzheimer’s disease. |
| Mevastatin |
Penicillium |
Used to reduce blood cholesterol levels. |
| Podophyllotoxin |
May apple |
Used against warts and skin cancers. |
| Pethidine |
Synthetic analogue of atropine |
Morphine-like analgesic |
| Tirofiban |
Synthetic analogue of snake venom peptide |
A blocker of platelet aggregation used in angina. |
| Vinblastine |
Periwinkle |
Used to treat leukemias and lymphomas. |
| Vinblastine |
Periwinkle |
Used to treat leukemias and lymphomas. |
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